University of Seoul
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Publications

Department of Life Science, UOS
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380. Structural variants drive context-dependent oncogene activation in cancer
Zhichao Xu, Dong-Sung Lee, Sahaana Chandran, Victoria T. Le, Rosalind Bump, Jean Yasis, Sofia Dallarda, Samantha Marcotte, Benjamin Clock, Nicholas Haghani, Chae Yun Cho, Kadir C. Akdemir, Selene Tyndale, P. Andrew Futreal, Graham McVicker, Geoffrey M. Wahl, Jesse R. Dixon
Nature, 612, 564-572, doi.org/10.1038/s41586-023-06046-z Link
379. Epigenomic and chromosomal architectural reconfiguration in developing human frontal cortex and hippocampus
Matthew G. Heffel, Jingtian Zhou, Yi Zhang, Dong-Sung Lee, Kangcheng Hou, Oier Pastor Alonso, Kevin Abuhanna, Anthony D. Schmitt, Terence Li, Maximilian Haeussler, Brittney Wick, Martin Jinye Zhang, Fangming Xie, Ryan S. Ziffra, View ORCID ProfileEran A. Mukamel, Eleazar Eskin, Bogdan Pasaniuc, Jos
bioRxiv, doi.org/10.1101/2022.10.07.511350 Link
378. Deciphering the Evolutionary History of Complex Rearrangements in Head and Neck Cancer Patients Using Multi-Omic Approach
Jeesoo Chae, Jin Seok Lee, Jongkeun Park, Dong-Sung Lee, Weon Seo Park, Benjamin Clock, Jesse R. Dixon, Yuh-Seog Jung, Dongwan Hong
bioRxiv, doi.org/10.1101/2022.08.19.504509 Link
377. Widespread somatic L1 retrotransposition in normal colorectal epithelium
Chang Hyun Nam, Jeonghwan Youk, Jeong Yeon Kim, Joonoh Lim, Jung Woo Park, Soo A Oh, Hyun Jung Lee, Ji Won Park, Seung-Yong Jeong, Dong-Sung Lee, Ji Won Oh, Jinju Han, Junehawk Lee, Hyun Woo Kwon, Min Jung Kim, Young Seok Ju
Nature, 617, 540-547, doi.org/10.1101/2022.05.18.492429 Link
376. Single nucleus multi-omics identifies human cortical cell regulatory genome diversity
Chongyuan Luo, Hanqing Liu, Fangming Xie, Ethan J. Armand, Kimberly Siletti, Trygve E. Bakken, Rongxin Fang, Wayne I. Doyle, Tim Stuart, Rebecca D. Hodge, Lijuan Hu, Bang-An Wang, Zhuzhu Zhang, Sebastian Preissl, Dong-Sung Lee, Jingtian Zhou, Sheng-Yong Niu, Rosa Castanon, Anna Bartlett, Angeline Ri
Cell Genomics, 2(3), 100107, doi.org/10.1016/j.xgen.2022.100107 Link
375. Real-time Underwater Nanoplastic Detection beyond Diffusion Limit and Low Raman Scattering Cross-section via Electro-photonic Tweezers
EuiSang Yu, Eui Tae Jeong, Seungha Lee, In Soo Kim, Seok Chung, Seungyeon Han, Inhee Choi, YongSang Ryu
ACS Nano, 17(3), 2114-2123, doi.org/10.1021/acsnano.2c07933 Link
374. Quantum Electrodynamic Behavior of Chlorophyll in Plasmonic Nanocavity
Egor Kokin, Hyun Ji An, Donghoon Koo, Seungyeon Han, Keumrai Whang, Taewook Kang, Inhee Choi, Luke P. Lee
Nano Letters, 22(24), 9861-9868, doi.org/10.1021/acs.nanolett.2c02917 Link
373. Ultrasensitive and Real-time Optical Detection of Cellular Oxidative Stress Using Graphene-covered Tunable Plasmonic Interfaces
Hakchun Kim, Hyun Ji An, Junhee Park, Yohan Lee, Min Seob Kim, Seungki Lee, Nam Dong Kim, Jihwan Song, Inhee Choi
Nano Convergence, 9(23), 1-12, doi.org/10.1186/s40580-022-00315-9 Link
372. Advanced Oxidative Chemical Recycling of Carbon-Fiber Reinforced Plastic Using Hydroxyl Radicals and Accelerated by Radical Initiators
Ayeong Yu, Younggi Hong, Eunhyun Song, Hakchun Kim, Inhee Choi, Munju Goh
Journal of Industrial and Engineering Chemistry, 112, 193-200, doi.org/10.1016/j.jiec.2022.05.011 Link
371. Colloidal Multiscale Assembly via Photothermally-driven Convective Flow for Sensitive In-solution Plasmonic Detections
Junhee Park, Seungki Lee, Hyunjoo Lee, Seungyeon Han, Tae Ho Kang, Dongchoul Kim, Taewook Kang, Inhee Choi
Small, 18(24), 2201075, doi.org/10.1002/smll.202201075 Link
370. Optical Detection of Copper Ions via Structural Dissociation of Plasmonic Sugar Nanoprobes
Jieun You, Seungki Lee, Hyun Jin Tark, Min Jeong Nang, Ji Hyeon Oh, Inhee Choi
Analytical Chemistry, 94(14), 5521-5529, doi.org/10.1021/acs.analchem.1c04340 Link
369. Redox/pH-dual Responsive Functional Hollow Silica Nanoparticles for Hyaluronic acid-guided Drug Delivery
Donghun Shin, Seungki Lee, Hyun Sung Jang, Ji Bong Joo, Inhee Choi
Journal of Industrial and Engineering Chemistry, 108, 72-80, doi.org/10.1016/j.jiec.2021.12.026 Link
368. Gold and Silver Plasmonic Nanoprobes Trace the Positions of Histone Codes
Inhee Choi, Jihwan Song, Hyunsung Park
BMB reports, 55(3), 111–112, doi.org/10.5483/BMBRep.2022.55.3.004 Link
367. Sensitive and Homogenous Surface-Enhanced Raman Scattering Detection Using Heterometallic Interfaces on Metal-Organic Framework-Derived Structure
Jae Yeon Lee, Seungki Lee, Donghun Shin, Jung Tae Park, Inhee Choi
Advanced Materials Interfaces, 9(7), 2102122, doi.org/10.1002/admi.202102122 Link
366. Structural and Biochemical Studies of Bacillus subtilis MobB
Kim, D., Choi, S., Kim, H., Choe, J.
Crystals, 11 (10), 1262, doi.org/10.3390/cryst11101262 Link
365. Cyclin Y, a novel actin-binding protein, regulates spine plasticity through the cofilin-actin pathway
Hongik Hwang, Young-Na Hur, Heesung Sohn, Jiyeon Seo, Jung-Hwa Hong, Eunsil Cho, Yuri Choi, Saebom Lee, Seongeun Song, A-Ram Lee, Suyeon Kim, Dong-Gyu Jo, Hyewhon Rhim, Mikyoung Park
Prog Neurobiol, 198, 101915, 10.1016/j.pneurobio.2020.101915 Link
364. Neurogranin, Encoded by the Schizophrenia Risk Gene NRGN, Bidirectionally Modulates Synaptic Plasticity via Calmodulin-Dependent Regulation of the Neuronal Phosphoproteome
Hongik Hwang, Matthew J Szucs, Lei J Ding, Andrew Allen, Xiaobai Ren, Henny Haensgen, Fan Gao, Hyewhon Rhim, Arturo Andrade, Jen Q Pan, Steven A Carr, Rushdy Ahmad, Weifeng Xu
Biol Psychiatry, 89(3), 256-269, 10.1016/j.biopsych.2020.07.014 Link
363. Central administration of afzelin extracted from Ribes fasciculatum improves cognitive and memory function in a mouse model of dementia
So-Young Oh, Min Jun Jang, Yun-Hyeok Choi, Hongik Hwang, Hyewhon Rhim, Bonggi Lee, Chun Whan Choi, Min Soo Kim
Sci Rep, 11(1), 9182, 10.1038/s41598-021-88463-6 Link
362. Effect of the Gintonin-Enriched Fraction on Glucagon-Like-Protein-1 Release
Rami Lee, Sun-Hye Choi, Han-Sung Cho, Hongik Hwang, Hyewhon Rhim, Hyoung-Chun Kim, Sung-Hee Hwang, Seung-Yeol Nah
Molecules, 26(20), 6298, 10.3390/molecules26206298 Link
361. Hypothalamic administration of sargahydroquinoic acid elevates peripheral thermogenic signaling and ameliorates high fat diet-induced obesity through the sympathetic nervous system
Doyeon Kim, Yuna Lee, Hyeung-Rak Kim, Yeo Jin Park, Hongik Hwang, Hyewhon Rhim, Taek Kang, Chun Whan Choi, Bonggi Lee, Min Soo Kim
Sci Rep, 11(1), 21315, 10.1038/s41598-021-00074-3 Link
360. High-spatial and colourimetric imaging of histone modifications in single senescent cells using plasmonic nanoprobes
Hyun Ji An, Yun Kim, Soojeong Chang, Hakchun Kim, Jihwan Song, Hyunsung Park, Inhee Choi
Nature Communications, 12(1), 5899, doi.org/10.1038/s41467-021-26224-9 Link
359. Effects of Aloe vera Flower Extract and Its Active Constituent Isoorientin on Skin Moisturization via Regulating Involucrin Expression: In Vitro and Molecular Docking Studies
Sultana Razia, Hyunsung Park, Eunju Shin, Kyu-Suk Shim, Eunae Cho and Sun-Yeou Kim
Molecules, 26(9), 2626, doi.org/10.3390/molecules26092626 Link
358. Hypoxia-Driven HIF-1α Activation Reprograms Pre-Activated NK Cells towards Highly Potent Effector Phenotypes via ERK/STAT3 Pathways
Seon Ah Lim, Yunwon Moon, Min Hwa Shin, Tae-Jin Kim, Sehyun Chae, Cassian Yee, Daehee Hwang, Hyunsung Park, Kyung-Mi Lee
Cancers, 13(8), 1904, doi.org/10.3390/cancers13081904 Link
357. SGK1 inhibition in glia ameliorates pathologies and symptoms of Parkinson's disease.
Kwon O, Song J, Yang Y, Kim S, Kim J, SeoK M, Hwang I, Yu J, Jenisha K, Maeng H, Kim J, Jho EH, Ko S, Son H, Chang M, Lee S.
EMBO Mol Med., 13(4);e13076, doi: 10.15252/emmm.202013076.
356. LGK974 suppresses lipopolysaccharide-induced endotoxemia in mice by modulating the crosstalk between the Wnt/β-catenin and NF-κB pathways.
Jang J, Song J, Lee H, Sim I, Kwon YV, Jho EH*, and Yoon Y*.
Exp Mol Med., 53(3);407-421, doi: 10.1038/s12276-021-00577-z.
355. PARsylated transcription factor EB (TFEB) regulates the expression of a subset of Wnt target genes by forming a complex with β-catenin-TCF/LEF1.
Kim S, Song G, Lee T, Kim M, Kwon H, Kim J, Jeong W, Lee U, Na C, Kang S, Kim W, Seong J, and Jho EH.
Cell Death Differ., 28(9);2555-2570, doi: 10.1038/s41418-021-00770-7.
354. TFEB Regulates Pluripotency Transcriptional Network in Mouse Embryonic Stem Cells Independent of Autophagy-lysosomal Biogenesis.
Tan A, Prasad R and Jho EH.
Cell Death Dis., 12(4);343, doi: 10.1038/s41419-021-03632-9.
353. Role of the Hippo pathway and mechanisms for controlling cellular localization of YAP/TAZ.
Kwon H, Kim J, Jho EH.
FEBS J. , 289(19);5798-5818, doi: 10.1111/febs.16091. 
352. Regulation of the low-density lipoprotein receptor-related protein LRP6 and its association with disease: Wnt/β-catenin signaling and beyond.
Jeong W, Jho EH.
Front. Cell Dev. Biol., 9;714330, doi: 10.3389/fcell.2021.714330
351. Hypermethylation of Mest promoter causes aberrant Wnt signaling in the patients of Alzheimer’s disease.
Prasad R, Jung W, Tan A, Song Y, Moon S, Shaker MR, Sun W, Lee J, Ryu H, Lim HK, and Jho EH.
Scientific Rep., 11(1);20075, doi: 10.1038/s41598-021-99562-9.
350. ISG15-dependent activation of the sensor MDA5 is antagonized by the SARS-CoV-2 papain-like protease to evade host innate immunity.
GuanQun Liu*, Jung-Hyun Lee*, Zachary M. Parker, Dhiraj Acharya, Jessica J. Chiang, Michiel van Gent, William Riedl, Meredith E. Davis-Gardner, Effi Wies, Cindy Chiang & Michaela U. Gack
Nature Microbiology, 6, 467-478, doi: 10.1038/s41564-021-00884-1 Link
349. The BRCA1 Pseudogene Negatively Regulates Antitumor Responses through Inhibition of Innate Immune Defense Mechanisms
Yoo Jane Han, Jing Zhang, Jung-Hyun Lee, Jennifer M Mason, Olga Karginova, Toshio F Yoshimatsu, Qinyu Hao, Ian Hurley, Laia Paré Brunet, Aleix Prat, Kannanganattu V Prasanth, Michaela U Gack, Olufunmilayo I Olopade
Cancer Research, 81(6), 1540-1551, doi: 10.1158/0008-5472.CAN-20-1959 Link
348. Free ubiquitin: a novel therapeutic target for neurodegenerative diseases
Chul-Woo Park, Kwon-Yul Ryu
Neural Regeneration Research, 16(9), 1781–1782, doi.org/10.4103/1673-5374.306075 Link
347. Polyubiquitin gene Ubb is required for upregulation of Piwi protein level during mouse testis development
Bitnara Han, Byung-Kwon Jung, So-Hyun Park, Kyu Jin Song, Muhammad Ayaz Anwar, Kwon-Yul Ryu, Kwang Pyo Kim
Cell Death Discovery, 7, 194, doi.org/10.1038/s41420-021-00581-2 Link
346. Regulation of polyubiquitin genes to meet cellular ubiquitin requirement
Seung-Woo Han, Byung-Kwon Jung, Kwon-Yul Ryu
BMB Reports, 54(4), 185–195, doi.org/10.5483/BMBRep.2021.54.4.005 Link
345. Stress response of mouse embryonic fibroblasts exposed to polystyrene nanoplastics
Seung-Woo Han, Jinhee Choi, Kwon-Yul Ryu
International Journal of Molecular Sciences, 22(4), 2094, doi.org/10.3390/ijms22042094 Link
344. Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition)
Daniel J. Klionsky, …, Kwon-Yul Ryu, …, Chun-Kit Tong
Autophagy, 17(1), 1–382, doi.org/10.1080/15548627.2020.1797280 Link
343. Hi-C as a molecular rangefinder to examine genomic rearrangements
Kyukwang Kim, Mooyoung Kim, Yubin Kim, Dongsung Lee, Inkyung Jung
Seminars in Cell & Developmental Biology, 121, 161-170, doi.org/10.1016/j.semcdb.2021.04.024 Link
342. High-Spatial and Colourimetric Imaging of Histone Modifications in Single Senescent Cells Using Plasmonic Nanoprobes
Hyun Ji An, Yun Kim, Soojeong Chang, Hakchun Kim, Jihwan Song, Hyunsung Park, Inhee Choi
Nature Communications, 12(1), 5899, doi.org/10.1038/s41467-021-26224-9 Link
341. Multiple pathways of alveolar macrophage death contribute to pulmonary inflammation induced by silica nanoparticles
EunJung Park, MinSung Kang, SeungWoo Jin, Tae Geol Lee ,GwangHee Lee, DongWan Kim, EunWoo Lee, Junhee Park, Inhee Choi, Youngmi Kim Pak
Nanotoxicology, 15(8), 1087-1101, doi.org/10.1080/17435390.2021.1969461 Link
340. Sensitive and Direct Optical Monitoring of Release and Cellular Uptake of Aqueous CO from CO-releasing Molecules
Yonghee Shin, Keumrai Whang, Jeong Ha Hwang, Yuseung Jo, JeongWoo Choi, Junhee Park, Inhee Choi, Taewook Kang
Analytical Chemistry, 93(28), 9927-9932, doi.org/10.1021/acs.analchem.1c02216 Link
339. Repeated Intratracheal Instillation of Zinc Oxide Nanoparticles Induced Pulmonary Damage and a Systemic Inflammatory Response in Cynomolgus Monkeys
Eun-Jung Park, Soo Nam Kim, Cheolho Yoon, Jae-Woo Cho, Gwang-Hee Lee, Dong-Wan Kim, Junhee Park, Inhee Choi, Seung Hyeun Lee, Jeongah Song, Hyun-Ji Lim, MinSung Kang, HongSoo Lee
Nanotoxicology, 15(5), 621-635, doi.org/10.1080/17435390.2021.1905899 Link
338. Extra-and Intracellular Monitoring of TGF-β Using Single Immunoplasmonic Nanoprobes
Junhee Park, Seungki Lee, Jinhee Choi, Inhee Choi
ACS Sensors, 6(5), 1823-1830, doi.org/10.1021/acssensors.0c02723 Link
337. Induction of crystal nucleation by orientation-controlled binding of His6-tagged proteins to functionalized gold nanoparticles
Park, J., Kang, T.H., Choi, I., Choe, J.
CrystEngComm, 22 (6), 1032-1040, 10.1039/C9CE01786K Link
336. Effects of a gintonin-enriched fraction on hair growth: an in vitro and in vivo study
Na-Eun Lee, Sang-Deuk Park, Hongik Hwang, Sun-Hye Choi, Ra Mi Lee, Sung Min Nam, Jong Hee Choi, Hyewhon Rhim, Ik-Hyun Cho, Hyoung-Chun Kim, Sung-Hee Hwang, Seung-Yeol Nah
J Ginseng Res, 44(1), 168-177, 10.1016/j.jgr.2019.05.013 Link
335. Ginseng Gintonin Contains Ligands for GPR40 and GPR55
Yeon-Jin Cho, Sun-Hye Choi, Rami Lee, Hongik Hwang, Hyewhon Rhim, Ik-Hyun Cho, Hyoung-Chun Kim, Jeong-Ik Lee, Sung-Hee Hwang, Seung-Yeol Nah
Molecules, 25(5), 1102, 10.3390/molecules25051102 Link
334. Gintonin stimulates autophagic flux in primary cortical astrocytes
Md Ataur Rahman, Hongik Hwang, Seung-Yeol Nah, Hyewhon Rhim
J Ginseng Res, 44(1), 67-78, 10.1016/j.jgr.2018.08.004 Link
333. Elevated O-GlcNAcylation induces an antidepressant-like phenotype and decreased inhibitory transmission in medial prefrontal cortex
Yoonjeong Cho, Hongik Hwang, Md Ataur Rahman, ChiHye Chung, Hyewhon Rhim
Sci Rep, 10(1), 6924, 10.1038/s41598-020-63819-6 Link
332. Ginsenoside Rk1 is a novel inhibitor of NMDA receptors in cultured rat hippocampal neurons
Nayeon Ryoo, Md Ataur Rahman, Hongik Hwang, Sung Kwon Ko, Seung-Yeol Nah, Hyoung-Chun Kim, Hyewhon Rhim
J Ginseng Res, 44(3), 490-495, 10.1016/j.jgr.2019.04.002 Link
331. Ccny knockout mice display an enhanced susceptibility to kainic acid-induced epilepsy
Hongik Hwang, Jiyeon Seo, Yuri Choi, Eunsil Cho, Heesung Sohn, Jaewon Jang, A-Ram Lee, Jiyoung Lee, Suyeon Kim, Hae-Young Koh, Mikyoung Park
Pharmacol Res, 160, 105100, 10.1016/j.phrs.2020.105100 Link
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